PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G081100.2
Common NameB456_012G081100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 337aa    MW: 37702.2 Da    PI: 6.1899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G081100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.5e-15217264254
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h + Er RR ++N++f+ Lr+++P++     +K++ a+i+  A++YIk+L
  Gorai.012G081100.2 217 TTKHFATERERRVHLNDKFQALRTMVPSP-----TKNDRASIVGDAIDYIKEL 264
                         579**************************.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.33E-16215283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.275215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-12216269No hitNo description
PfamPF000109.1E-13218264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-14218273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MNLQESGCFD PQYSMTHWHA LMVMGGLPSP DGTTTQTHDI LEDNLNLSSY NHHQLEEEDA  60
STAVQMEIQQ HHLLDTTTTN SHFIRPELSY EQSNWDAADH QSFNMLLSSS SPEAAYPPTP  120
DLLNLFHLPP KCAFLPNSSI SFKSDSASSV VCDPLFHLNL TPQPPVFREL LQSLPHGYTL  180
PADEKELYHD GDNGILEFTR DISMAAHAKG RDKAGKTTKH FATERERRVH LNDKFQALRT  240
MVPSPTKNDR ASIVGDAIDY IKELLRTVRE LKLVVEKKRC GQDRSKRLKT EETASAADAG  300
DGGCKLLGLG DPDQCYNTCL RSSWLQRKSK NSETPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460865.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLA0A0D2VWV30.0A0A0D2VWV3_G
STRINGVIT_15s0107g00380.t013e-85(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.16e-46bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]